PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960756.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 404aa MW: 44927.4 Da PI: 6.1251

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960756.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.9e-32	258	313	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGGs+ AtPk+i+elm v+gLt+++vkSHLQkYRl+ XP_024960756.1 258 KQRRCWSTELHRRFVNALQQLGGSKAATPKQIRELMRVDGLTNDEVKSHLQKYRLH 313 79****************************************************97 PP
2	Myb_DNA-binding	44.7	3e-14	260	311	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+te++ ++v+a +qlGg t+k I + m g+t ++ks++qky+ XP_024960756.1 260 RRCWSTELHRRFVNALQQLGGSkaaTPKQIRELMRvDGLTNDEVKSHLQKYR 311 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MGRLNPPPEL SLDFKPTFIP KTISQFLGEV ARIGIVSEKI LKVDDFVSRL ETEIRKIDAF 60 KRELPLCMLL MNDAIVTLKE ELMVFKKSTN QPVLEEFIPL KNTCDDYPKV ETDSGDKKNW 120 LSSTQLWNTN ENNSDTNQNH IPKQNSIQQA ILKRADEEQD GMIGDPYCGN SGREFIPFKG 180 YCGFTVDDTT RNEDKEEIPD SGLSLIAPGI KNPMRGNGFL SKTGANNELV PCSIPDVQSN 240 IRIGALQPQP PQHQTSRKQR RCWSTELHRR FVNALQQLGG SKAATPKQIR ELMRVDGLTN 300 DEVKSHLQKY RLHTRRFPSS NTSSDPSGVG LGGLWIPAQD QYVVESSKHI NTQSGSPDGP 360 LLNCTTATGG TSTTGGDSMD DGEDEKSENN CWKGHVHTSA KDNV

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MGRLNPPPEL SLDFKPTFIP KTISQFLGEV ARIGIVSEKI LKVDDFVSRL ETEIRKIDAF  60
KRELPLCMLL MNDAIVTLKE ELMVFKKSTN QPVLEEFIPL KNTCDDYPKV ETDSGDKKNW  120
LSSTQLWNTN ENNSDTNQNH IPKQNSIQQA ILKRADEEQD GMIGDPYCGN SGREFIPFKG  180
YCGFTVDDTT RNEDKEEIPD SGLSLIAPGI KNPMRGNGFL SKTGANNELV PCSIPDVQSN  240
IRIGALQPQP PQHQTSRKQR RCWSTELHRR FVNALQQLGG SKAATPKQIR ELMRVDGLTN  300
DEVKSHLQKY RLHTRRFPSS NTSSDPSGVG LGGLWIPAQD QYVVESSKHI NTQSGSPDGP  360
LLNCTTATGG TSTTGGDSMD DGEDEKSENN CWKGHVHTSA KDNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-51	G2-like family protein