PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960759.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 546aa MW: 61875.2 Da PI: 8.2562

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	91	112	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f++ G+C+ GdrC+F Hgp XP_024960759.1 91 PCYFYSN-GFCNKGDRCSFLHGP 112 7999999.*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MDEEVLEKRF TDCVYFLASP LTCKKGIECE YRHSEVARLN PRDCWYWLGG CCFNPDCPFR 60 HPPLEGFKEA HGESSEPKNG PALPVNKTNI PCYFYSNGFC NKGDRCSFLH GPSDGSVACK 120 SSKAASTMNN GIPCEKKLSS RSNTGLAPVK SHPDPSKTAQ IEKTHTESKP TLDSPQFASG 180 SAERSESPDI SATQCQENVV RSNSLLPREG FVQSESDVYD QSSDQQVDGY VEREGWLESS 240 PGFDVLVEGE SERLGYEGDA DYFSVHDEEG RKLDVHYAEC GFADPNEYDP AYPELGIPLG 300 EERYDVYDRL DNKRACDYLG KISGQSRESI FYRLSFQKRN LQAEPIFNGR RGPDLRERLK 360 KCKVDDSFQS CFSKGYHSPH LVGQQVRRHP RRQGSRGEID FDHRGNRLRK APPVNRYKQP 420 LKEKRLGKPQ FLPSEVSRAR KPALQQKRKS QVESAIFTGP KTLDQIKEEK KKTLQNQDLS 480 GSFNRTESDG FQGPRPLSEI LKNKRKLGVD THGNSNKKMR PTKFHWEVKI SLLKYNFISC 540 SVSFGF

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MDEEVLEKRF TDCVYFLASP LTCKKGIECE YRHSEVARLN PRDCWYWLGG CCFNPDCPFR  60
HPPLEGFKEA HGESSEPKNG PALPVNKTNI PCYFYSNGFC NKGDRCSFLH GPSDGSVACK  120
SSKAASTMNN GIPCEKKLSS RSNTGLAPVK SHPDPSKTAQ IEKTHTESKP TLDSPQFASG  180
SAERSESPDI SATQCQENVV RSNSLLPREG FVQSESDVYD QSSDQQVDGY VEREGWLESS  240
PGFDVLVEGE SERLGYEGDA DYFSVHDEEG RKLDVHYAEC GFADPNEYDP AYPELGIPLG  300
EERYDVYDRL DNKRACDYLG KISGQSRESI FYRLSFQKRN LQAEPIFNGR RGPDLRERLK  360
KCKVDDSFQS CFSKGYHSPH LVGQQVRRHP RRQGSRGEID FDHRGNRLRK APPVNRYKQP  420
LKEKRLGKPQ FLPSEVSRAR KPALQQKRKS QVESAIFTGP KTLDQIKEEK KKTLQNQDLS  480
GSFNRTESDG FQGPRPLSEI LKNKRKLGVD THGNSNKKMR PTKFHWEVKI SLLKYNFISC  540
SVSFGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	9e-06	C3H family protein