PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960817.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 374aa MW: 42965.5 Da PI: 6.0926

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	99	152	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+a+e+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_024960817.1 99 PRLRWTPDLHLRFVHAIERLGGQERATPKLVLQLMNIKGLSISHVKSHLQMYRS 152 9****************************************************7 PP
2	Myb_DNA-binding	51.7	2.1e-16	100	151	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++++v+a+++lGg t+k++ + m+ kg++ ++ks++q+y+ XP_024960817.1 100 RLRWTPDLHLRFVHAIERLGGQeraTPKLVLQLMNiKGLSISHVKSHLQMYR 151 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MKKSGSFNYE EDAEEDYLTK QNPSFHEIEQ VDDDDDDDDS TEDDDVEEDE SEEVDHDSSG 60 GHRPKNGSTS SITVEEISDK KASSLVTGSV RPYVRSKNPR LRWTPDLHLR FVHAIERLGG 120 QERATPKLVL QLMNIKGLSI SHVKSHLQMY RSKKIDDGSN QEQGILNEGD DLHIYHLSKL 180 PMLQSYNQRS LSNFRCQDGL WSPQTNLNYN PFMNGLRHGV FGSMAERMLA RNNIRNGHSS 240 FNHDQASWRR LQSNNIELGL FKNLERLSMP NQIRRNTTQM DMNTIPKDQE HEEKRVLKRK 300 EIDQESEHLD LNLSLKIKLP KEDHMISRKR NEEFDENSLS LSLNCISNSS RVTRSKHAKT 360 MGSSSSTASL DLTL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MKKSGSFNYE EDAEEDYLTK QNPSFHEIEQ VDDDDDDDDS TEDDDVEEDE SEEVDHDSSG  60
GHRPKNGSTS SITVEEISDK KASSLVTGSV RPYVRSKNPR LRWTPDLHLR FVHAIERLGG  120
QERATPKLVL QLMNIKGLSI SHVKSHLQMY RSKKIDDGSN QEQGILNEGD DLHIYHLSKL  180
PMLQSYNQRS LSNFRCQDGL WSPQTNLNYN PFMNGLRHGV FGSMAERMLA RNNIRNGHSS  240
FNHDQASWRR LQSNNIELGL FKNLERLSMP NQIRRNTTQM DMNTIPKDQE HEEKRVLKRK  300
EIDQESEHLD LNLSLKIKLP KEDHMISRKR NEEFDENSLS LSLNCISNSS RVTRSKHAKT  360
MGSSSSTASL DLTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-47	G2-like family protein