PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024960845.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 597aa MW: 64207.8 Da PI: 7.117

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024960845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	319	377	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_024960845.1 319 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 377 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MAKGSSGLSF DSDPIRLLFP HKPTRINSFS DNNNHHHHHR HTWTLMDAAG NRSSSPPPPT 60 TIQFPLNLNC NHDRPHDKRI NEMDFFADKK NEDDRSRLPS DPAAPLTELD FNINTGLHLV 120 TGNTSSDQSL VDDGISPNSE DKRAKNELAV AQAQLEKMNT ENQRLREALN QLTVNYNTLQ 180 SHLVTMMQQK QREEQSADDH KTSNDGGGGG GEVMIVPRPF MDLGLAAPTA VETDENSQSS 240 SEGRSHDEHS RSPPIHTTIG QMEEGSEHGS QVIRTGSNKV PRLSSSKNNN TTNIDQATEA 300 TIRKARVSVR ARSEAPMIAD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA 360 EDRTILITTY EGNHNHPLPP AAMAMASTTS SAARMLLSGS MPSSDGLMNS NFLARTFLSC 420 SSSMATISAS APFPTVSLDL TQTPNPLQFQ RGPGQFQVPF SNPQQQNFTG PNAALLPQIF 480 GQALYNQSKF SGLQMSQDME GGASSQLGIP PLHHQGASPA ALADTVTALT ADPNFSAALA 540 AAISSVFGGG GSQPNSGGTT NHGNVTATNS NNNGSATTSN NNSHGNNKVN NSSFQAN

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MAKGSSGLSF DSDPIRLLFP HKPTRINSFS DNNNHHHHHR HTWTLMDAAG NRSSSPPPPT  60
TIQFPLNLNC NHDRPHDKRI NEMDFFADKK NEDDRSRLPS DPAAPLTELD FNINTGLHLV  120
TGNTSSDQSL VDDGISPNSE DKRAKNELAV AQAQLEKMNT ENQRLREALN QLTVNYNTLQ  180
SHLVTMMQQK QREEQSADDH KTSNDGGGGG GEVMIVPRPF MDLGLAAPTA VETDENSQSS  240
SEGRSHDEHS RSPPIHTTIG QMEEGSEHGS QVIRTGSNKV PRLSSSKNNN TTNIDQATEA  300
TIRKARVSVR ARSEAPMIAD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA  360
EDRTILITTY EGNHNHPLPP AAMAMASTTS SAARMLLSGS MPSSDGLMNS NFLARTFLSC  420
SSSMATISAS APFPTVSLDL TQTPNPLQFQ RGPGQFQVPF SNPQQQNFTG PNAALLPQIF  480
GQALYNQSKF SGLQMSQDME GGASSQLGIP PLHHQGASPA ALADTVTALT ADPNFSAALA  540
AAISSVFGGG GSQPNSGGTT NHGNVTATNS NNNGSATTSN NNSHGNNKVN NSSFQAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-112	WRKY family protein