PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961034.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 465aa MW: 50753.5 Da PI: 8.4387

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.3	1.8e-24	197	252	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e +++ ++v++i+Y+g+H+h+ XP_024961034.1 197 DGYNWRKYGQKQVKSPQGSRSYYKCTYTECEAKK-IESCDQYNSVTKIVYKGQHKHD 252 9*****************************98.*******************7 PP
2	WRKY	92.1	4.3e-29	342	399	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YY+CtsagCpv+k++e + + + v+ tY+g H+h+ XP_024961034.1 342 ADGYRWRKYGQKMVKGNPHPRNYYKCTSAGCPVRKHIEMAVDGSSEVILTYKGVHDHD 399 6**************************************99999*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDDDSDRSSE ATQLENLTTA GKRHAHHHAA KDSGTVNEDV YDDDDDDDDA TDDQREVSEL 60 ESSPMEIVAY SRTCQSETLV SGLAEVPIQY EMRQDELEHL KNQLQGSHQE ALAIVIAQAA 120 QAHAGSKIQL PGILSSSSEL SPPSVAPNSN LPRLNSQVEM LSPAGNAVSI RVAEADQKIT 180 SDSKIVSTSR TVKTPIDGYN WRKYGQKQVK SPQGSRSYYK CTYTECEAKK IESCDQYNSV 240 TKIVYKGQHK HDPPKKVFTR RGKILSASSR AQERKMISTS GSKQNKSSGS VSNGPILVEE 300 MDAPPPKRRV KKSSSTSPGS VLKPPKKPKF VVHAASDVGI SADGYRWRKY GQKMVKGNPH 360 PRNYYKCTSA GCPVRKHIEM AVDGSSEVIL TYKGVHDHDM PIRTKDQGSP SGLLLTAVSS 420 TSKNSSQSKK GETSPVSTTE PPIGETEKTT DESSRTLASF KTIPC

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDDDSDRSSE ATQLENLTTA GKRHAHHHAA KDSGTVNEDV YDDDDDDDDA TDDQREVSEL  60
ESSPMEIVAY SRTCQSETLV SGLAEVPIQY EMRQDELEHL KNQLQGSHQE ALAIVIAQAA  120
QAHAGSKIQL PGILSSSSEL SPPSVAPNSN LPRLNSQVEM LSPAGNAVSI RVAEADQKIT  180
SDSKIVSTSR TVKTPIDGYN WRKYGQKQVK SPQGSRSYYK CTYTECEAKK IESCDQYNSV  240
TKIVYKGQHK HDPPKKVFTR RGKILSASSR AQERKMISTS GSKQNKSSGS VSNGPILVEE  300
MDAPPPKRRV KKSSSTSPGS VLKPPKKPKF VVHAASDVGI SADGYRWRKY GQKMVKGNPH  360
PRNYYKCTSA GCPVRKHIEM AVDGSSEVIL TYKGVHDHDM PIRTKDQGSP SGLLLTAVSS  420
TSKNSSQSKK GETSPVSTTE PPIGETEKTT DESSRTLASF KTIPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	7e-83	WRKY family protein