PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961083.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 398aa MW: 45399.1 Da PI: 5.5294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	147	170	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H XP_024961083.1 147 YICGVCGRKCKTNLDLKKHFKQlH 170 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MNLLCKSISL TLNPPSSHQL PPSSFNFTTT TTTTFRRCRC SFMSSDHPAS MSEIDMVPTK 60 QGFFIAKPKK VVILWDLDNK PPRGPPYDAA MALKNIANHF GQVVEASAYA NRHAFIHLPH 120 WVLEQRRDQR RVEILERKGV ATPSEPYICG VCGRKCKTNL DLKKHFKQLH VREREKKMNR 180 MKSLKGKKRQ RFKERFISGN HKYAEAARTL VTPKVGYGLA AELRRAGIFV KTVEDKPQAA 240 DWALKRQMQH SMSRGIDWLV LVSDDSDFSE MLRKARASNL GTVVVGDWDR ALGRQADLWV 300 PWNRVENGEI TEEDLVPRST SGEFVNDLNA GVCVSNLDEL LGEKSDFYQS KISVFSEGED 360 EDEVEDEDED EEDVMDASDY LSDSDDEEED DEALDWYT

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MNLLCKSISL TLNPPSSHQL PPSSFNFTTT TTTTFRRCRC SFMSSDHPAS MSEIDMVPTK  60
QGFFIAKPKK VVILWDLDNK PPRGPPYDAA MALKNIANHF GQVVEASAYA NRHAFIHLPH  120
WVLEQRRDQR RVEILERKGV ATPSEPYICG VCGRKCKTNL DLKKHFKQLH VREREKKMNR  180
MKSLKGKKRQ RFKERFISGN HKYAEAARTL VTPKVGYGLA AELRRAGIFV KTVEDKPQAA  240
DWALKRQMQH SMSRGIDWLV LVSDDSDFSE MLRKARASNL GTVVVGDWDR ALGRQADLWV  300
PWNRVENGEI TEEDLVPRST SGEFVNDLNA GVCVSNLDEL LGEKSDFYQS KISVFSEGED  360
EDEVEDEDED EEDVMDASDY LSDSDDEEED DEALDWYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-158	C2H2 family protein