PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961212.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 360aa MW: 40483.7 Da PI: 8.4762

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	181	234	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_024961212.1 181 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 234 9****************************************************7 PP
2	Myb_DNA-binding	48.7	1.8e-15	182	233	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_024961212.1 182 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 233 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEFFPAQPDL SLRISPPDTQ PTSTTWRTSN PNDQDHDLDL GHFWKRALSS QNNHHGSTAR 60 SDTSFGLYFP YQTSHLNDSD LTQNMTNSTT NLQQYHHQKL SSELGLLTPI RGVPLYYQNT 120 HPNFQILAQY HHQNNQTSSD SCITATSSSS ASLIHGNSIN NIARSRFLSS RFPAKRSVRA 180 PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDH 240 KALLSTGQPE VFDNGSSGDN SYDIILGTEN RRTELSTEHG GGRSSVYQDK EFQYGVWSNS 300 SREALLHGKH GDFEANIPSL EKEMSSKGMK NERSSEVSSS SHSEARLKKP NLEFTLGRAF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEFFPAQPDL SLRISPPDTQ PTSTTWRTSN PNDQDHDLDL GHFWKRALSS QNNHHGSTAR  60
SDTSFGLYFP YQTSHLNDSD LTQNMTNSTT NLQQYHHQKL SSELGLLTPI RGVPLYYQNT  120
HPNFQILAQY HHQNNQTSSD SCITATSSSS ASLIHGNSIN NIARSRFLSS RFPAKRSVRA  180
PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDH  240
KALLSTGQPE VFDNGSSGDN SYDIILGTEN RRTELSTEHG GGRSSVYQDK EFQYGVWSNS  300
SREALLHGKH GDFEANIPSL EKEMSSKGMK NERSSEVSSS SHSEARLKKP NLEFTLGRAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-62	G2-like family protein