PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961251.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARR-B
Protein Properties Length: 650aa    MW: 71711.8 Da    PI: 7.7961
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85.2e-28198251155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ +LH++Fv av+qL G ekA+P++il+lm+v+gLt+e+v+SHLQkYRl
  XP_024961251.1 198 KPRVVWSIDLHRKFVAAVNQL-GDEKAVPRRILDLMNVDGLTRENVASHLQKYRL 251
                     79*******************.9*******************************8 PP
2Myb_DNA-binding34.93.5e-11200250148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ +++ ++v av+qlG +   +++I   m+  g+t++++ s++qky+
   XP_024961251.1 200 RVVWSIDLHRKFVAAVNQLGDEkaVPRRILDLMNvDGLTRENVASHLQKYR 250
                      678*****************99****************************7 PP
3Response_reg76.68.9e-26251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll  +l+k +y +v+++ ++  al++lke++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++++++++ + +  G
  XP_024961251.1  25 VLAVDDDPTCLKLLDGLLRKCQY-QVTTTNQAITALKMLKENRnrFDLVISDVYMPDMDGFKLLELVGL-EMDLPVIMLSGNSDPKLVMKGITHG 117
                     799********************.***************999999*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+  eel++
  XP_024961251.1 118 ACDYLVKPVRLEELRN 133
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    
MTVEEIRGVV AGNNEINRFP IGMRVLAVDD DPTCLKLLDG LLRKCQYQVT TTNQAITALK  60
MLKENRNRFD LVISDVYMPD MDGFKLLELV GLEMDLPVIM LSGNSDPKLV MKGITHGACD  120
YLVKPVRLEE LRNIWQHVIR RKVESKPQSK SNNNHEKSNQ GNEGGDQNVK LNRKRKDEDE  180
DVEENGHESD DDPSSQKKPR VVWSIDLHRK FVAAVNQLGD EKAVPRRILD LMNVDGLTRE  240
NVASHLQKYR LYIKRISHQA NMVAAFGGSK DASSYMRMSP LEGLGDFRIL SSSGRLSNAA  300
YAPSGILGRL NSATGVTLHS LMAPPLVQPN HTQNKLQPVN HQNMNLFQEI PSSFDQCSNK  360
PNTQLTDFSS IEESRIFTGN KLVDFNSIDE SRMFTGSNPL MDPSVGLGSK SLKLSSTGSE  420
SFNLLSSSSN FLDQNGNQPP NFSSNQLPVG GNYGYSATVK GGICSNITTT DTIPLEAHGG  480
GLVDEIVQNV NNQSLSNQKN GQYSKQDYSQ YSQNAFSTLA SLALASGGGG GLSGPLSHGG  540
LNGGTSALFK TEMPSLEMKM RSSEDGLVVN NGYGSLDGLM TGMMKRVRSF PLCIYVCVKN  600
LESHSIFSSN QHATLILYQD WTFTSESIFS HRKWGCFKNQ AFNRKNRCQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-120ARR-B family protein