PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961253.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 609aa MW: 66622.9 Da PI: 6.2542

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.7e-28	198	251	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qL G ekA+P++il+lm+v+gLt+e+v+SHLQkYRl XP_024961253.1 198 KPRVVWSIDLHRKFVAAVNQL-GDEKAVPRRILDLMNVDGLTRENVASHLQKYRL 251 79*****************.9*****************************8 PP
2	Myb_DNA-binding	35	3.2e-11	200	250	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ +++ ++v av+qlG + +++I m+ g+t++++ s++qky+ XP_024961253.1 200 RVVWSIDLHRKFVAAVNQLGDEkaVPRRILDLMNvDGLTRENVASHLQKYR 250 678***************99**************************7 PP
3	Response_reg	76.8	8e-26	25	133	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ ++ll +l+k +y +v+++ ++ al++lke++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++++++++++ + + G XP_024961253.1 25 VLAVDDDPTCLKLLDGLLRKCQY-QVTTTNQAITALKMLKENRnrFDLVISDVYMPDMDGFKLLELVGL-EMDLPVIMLSGNSDPKLVMKGITHG 117 799******************.***********999999***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp+ eel++ XP_024961253.1 118 ACDYLVKPVRLEELRN 133 ************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MTVEEIRGVV AGNNEINRFP IGMRVLAVDD DPTCLKLLDG LLRKCQYQVT TTNQAITALK 60 MLKENRNRFD LVISDVYMPD MDGFKLLELV GLEMDLPVIM LSGNSDPKLV MKGITHGACD 120 YLVKPVRLEE LRNIWQHVIR RKVESKPQSK SNNNHEKSNQ GNEGGDQNVK LNRKRKDEDE 180 DVEENGHESD DDPSSQKKPR VVWSIDLHRK FVAAVNQLGD EKAVPRRILD LMNVDGLTRE 240 NVASHLQKYR LYIKRISHQA NMVAAFGGSK DASSYMRMSP LEGLGDFRIL SSSGRLSNAA 300 YAPSGILGRL NSATGVTLHS LMAPPLVQPN HTQNKLQPVN HQNMNLFQEI PSSFDQCSNK 360 PNTQLTDFSS IEESRIFTGN KLVDFNSIDE SRMFTGSNPL MDPSVGLGSK SLKLSSTGSE 420 SFNLLSSSSN FLDQNGNQPP NFSSNQLPVG GNYGYSATVK GGICSNITTT DTIPLEAHGG 480 GLVDEIVQNV NNQSLSNQKN GQYSKQDYSQ YSQNAFSTLA SLALASGGGG GLSGPLSHGG 540 LNGGTSALFK TEMPSLEMKM RSSEDGLVVN NGYGSLDGLM TGMMKREQEA RMIVDGEFGY 600 DSYAFGPCA

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MTVEEIRGVV AGNNEINRFP IGMRVLAVDD DPTCLKLLDG LLRKCQYQVT TTNQAITALK  60
MLKENRNRFD LVISDVYMPD MDGFKLLELV GLEMDLPVIM LSGNSDPKLV MKGITHGACD  120
YLVKPVRLEE LRNIWQHVIR RKVESKPQSK SNNNHEKSNQ GNEGGDQNVK LNRKRKDEDE  180
DVEENGHESD DDPSSQKKPR VVWSIDLHRK FVAAVNQLGD EKAVPRRILD LMNVDGLTRE  240
NVASHLQKYR LYIKRISHQA NMVAAFGGSK DASSYMRMSP LEGLGDFRIL SSSGRLSNAA  300
YAPSGILGRL NSATGVTLHS LMAPPLVQPN HTQNKLQPVN HQNMNLFQEI PSSFDQCSNK  360
PNTQLTDFSS IEESRIFTGN KLVDFNSIDE SRMFTGSNPL MDPSVGLGSK SLKLSSTGSE  420
SFNLLSSSSN FLDQNGNQPP NFSSNQLPVG GNYGYSATVK GGICSNITTT DTIPLEAHGG  480
GLVDEIVQNV NNQSLSNQKN GQYSKQDYSQ YSQNAFSTLA SLALASGGGG GLSGPLSHGG  540
LNGGTSALFK TEMPSLEMKM RSSEDGLVVN NGYGSLDGLM TGMMKREQEA RMIVDGEFGY  600
DSYAFGPCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-121	ARR-B family protein