PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961304.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 255aa MW: 29344.1 Da PI: 9.5277

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F+r nL+ H r H XP_024961304.1 136 FVCEVCHKGFPRDQNLQLHRRGH 158 89*******************88 PP
2	zf-C2H2	15.5	5e-05	214	236	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k++ s+Lk H++++ XP_024961304.1 214 YKCLRCPKMYAVESDLKAHLKVC 236 9*******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MNKEEKPNSV YVGDMNETEL VRNVANFGAV SLPLLFAFKT SSSDDETIIK LYKAMDHQNV 60 IKMDMAFGSS SMLLLGKWNE EDHVNLQEFD IKPDDHVVPP LQPLTVPLRK RKNPADLDAA 120 EIVALSPTTL MTKNRFVCEV CHKGFPRDQN LQLHRRGHNL PWKLKQRTRD VRVKRKVYLC 180 PEPSCIHHNP CHALGDLSGI KKHYSRKHVS ERNYKCLRCP KMYAVESDLK AHLKVCGKKG 240 YRCQCNTLFS RYIIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	8e-68	C2H2 family protein