PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961349.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26850.2 Da    PI: 5.7891
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-2066119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++t+eqle+Le+ F+++ +++ +++ +LA++lgL+ rq+ vWFqNrRa++k
  XP_024961349.1  66 KKKRLTSEQLEALENSFQEEIKLDPDRKMKLAQELGLQPRQIAVWFQNRRARWK 119
                     56679************************************************9 PP
2HD-ZIP_I/II1192.6e-3866157293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++da+ +e+++L++ev +Lr+ lke
  XP_024961349.1  66 KKKRLTSEQLEALENSFQEEIKLDPDRKMKLAQELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEFDAVFREKQKLQDEVLALRTILKE 157
                     9*************************************************************************************988775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDWSSSNPMP FVPRPAQSSF AFLYNYNSDP YLYPPGGTEM KQMMQQGSLP MMDMSQLDYD  60
NNNQDKKKRL TSEQLEALEN SFQEEIKLDP DRKMKLAQEL GLQPRQIAVW FQNRRARWKA  120
KQLERLYDAL KQEFDAVFRE KQKLQDEVLA LRTILKEQGK RQAAVSTTGY TDMSGEETVE  180
STSVAAIRSS NNHPHHTVVA ANTAAAVECS YMLNYDGSAM PTPSYSNWAV LPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16695KKKRLTSEQLEALENSFQEEIKLDPDRKMK
2114122RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.16e-59HD-ZIP family protein