PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961438.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26962.8 Da    PI: 9.9633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  XP_024961438.1  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box99.16.6e-33811747100
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ e+++++s++ e++kLk++ie L++++Rh++GedLe+Lsl+eLq++eqqLe++lk+iR+kKn++++e+i+el kkek+lqe+n++L+kkl+e
  XP_024961438.1  81 TAPETETQASWTLESSKLKAKIEVLEKNIRHYVGEDLEQLSLRELQNVEQQLETALKRIRTKKNQVMHESISELHKKEKALQERNNSLSKKLKE 174
                     455677889**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTH  60
SSMETILERY ERYSYAEKLL TAPETETQAS WTLESSKLKA KIEVLEKNIR HYVGEDLEQL  120
SLRELQNVEQ QLETALKRIR TKKNQVMHES ISELHKKEKA LQERNNSLSK KLKENEKKST  180
SEQQDAMLPP HSFPSLANSS GPFIGAAMRE EESAQAHHVS SSMMPLWMIR HINQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-88MIKC_MADS family protein