PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961647.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 340aa MW: 36545.2 Da PI: 6.7277

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961647.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.7	2.5e-35	85	156	4	74
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 ++ ++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ XP_024961647.1 85 PRRASKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVnV 156 56789*********************************************************8888844421 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MASIDHRNIE SEEEEVRILS TSDPLLGDPP AYTIMPVPQR HNSPSPPVEV NLFKEEPMEN 60 DLEGSIPVAI VPMPTSNKQV AVATPRRASK DRHTKVEGRG RRIRMPAACA ARIFQLTREL 120 GHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVNVNGTL KIPTTPSDRE GATKRRKRAC 180 NSEFYDSASS NFAPVAPIAP QGLVPVWTMG APPTTGGAFF MIPQNGMVGP SSTHHPQLWA 240 IPAGATPFFS MAARPISNFV SAMQPGGDGE IQAPSRSVSN NSGSEEDKSG RVSTTMAPSS 300 SSVSTAQMLR DFSLEIYDKR EHQFMVGSSI DQTPSPKPSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	7e-68	TCP family protein