PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961727.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 390aa MW: 44528.8 Da PI: 4.5748

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.3e-06	309	354	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++k +e+Le+++++++ p+ + + + + ++++ ++V WF +R XP_024961727.1 309 LKKVHVETLERVYRRSKRPTNALISNIVHVTKIPRKKVLKWFEDKR 354 5677899***********************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MALHFWMAIQ LPSTSYISNN RLLHMPAISA NLRTLSSRCS VVTCARRRSS KSNSPISSSK 60 KKKQGLGRNS VGKEEDIEED AFEALFKQLE EDLKNDGLSF DDDDDEITEE DLAKLERELE 120 EALGDDELLG LFDDIVDEKN EVRVKDKESM NKKDKTMNET TEKEIKSNNL EEEGEEEEEE 180 EEEEEEEEEE ADGDGDGDEE GPLELKRWQL RRLAYALKDG RRKTSIKNLA ADLCLDRAIV 240 LELLRDPPPD LLMLSATLPN KADPTILEPV IKAEDVALLA SERDALNDKA TTKVPVHQMQ 300 SSWSAQKRLK KVHVETLERV YRRSKRPTNA LISNIVHVTK IPRKKVLKWF EDKRGEDGVP 360 DHRLPYQRDA EAENESEISH GNTKEVRKVI

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MALHFWMAIQ LPSTSYISNN RLLHMPAISA NLRTLSSRCS VVTCARRRSS KSNSPISSSK  60
KKKQGLGRNS VGKEEDIEED AFEALFKQLE EDLKNDGLSF DDDDDEITEE DLAKLERELE  120
EALGDDELLG LFDDIVDEKN EVRVKDKESM NKKDKTMNET TEKEIKSNNL EEEGEEEEEE  180
EEEEEEEEEE ADGDGDGDEE GPLELKRWQL RRLAYALKDG RRKTSIKNLA ADLCLDRAIV  240
LELLRDPPPD LLMLSATLPN KADPTILEPV IKAEDVALLA SERDALNDKA TTKVPVHQMQ  300
SSWSAQKRLK KVHVETLERV YRRSKRPTNA LISNIVHVTK IPRKKVLKWF EDKRGEDGVP  360
DHRLPYQRDA EAENESEISH GNTKEVRKVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	63	RRRSSKSNSPISSSKKKK
2	307	348	KRLKKVHVETLERVYRRSKRPTNALISNIVHVTKIPRKKVLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	3e-57	HB-other family protein