PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961808.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 192aa    MW: 21246.5 Da    PI: 4.6427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-051421811355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R+++++    +r ++P     ++  ++ ++iL +Av+Y+ksL+
  XP_024961808.1 142 REKMRKMVKSIRGIVPDG---GGNEMNTVAILDEAVKYLKSLK 181
                     78899999999******9...9999***************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MQGDQAGSGY LPDPHISSFF VQSVDFRPSR DCPRNFIIFD RTDKRSQIMY NPTTASNFGY  60
FPDSTTLVQK DVNAPRVMNE DSADIDALLS FEDEEEEEEE VSTGRTGRSD TSDTCDSWCS  120
RSRNGGPGLL SGHGSKGSEE KREKMRKMVK SIRGIVPDGG GNEMNTVAIL DEAVKYLKSL  180
KVEAQKIGLG YL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.17e-12bHLH family protein