PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961830.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 395aa MW: 44423.9 Da PI: 8.0073

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_024961830.1 66 YVCEICNQGFQRDQNLQMHRRRH 88 9*********************9 PP
2	zf-C2H2	15.6	4.5e-05	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_024961830.1 143 WVCDKCSKGYAVQSDYKAHLKTC 165 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MLDNHHHHHH FTTAAGPGPG PSSSDLFPSQ DNGLPNKRKR RPAGTPDPDA EVVSLSPKTL 60 LESDQYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRDSP EVKKRVFVCP EPSCLHHDPC 120 HALGDLVGIK KHFRRKHSNN KQWVCDKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR 180 VESFIEHQDA CTVRRIHADL PGFQPACSSR TASSTSPSND MNFSSIPTIP RLPHIQPPPQ 240 TVFSQTHEDI QNNLELQLLP SLSLYEQNNT HQTHLNLSIG SGLSLHREEE LKIAMADKAF 300 AEDARNQAKK QIEMAEMEFE NAKRIRQQAQ VELERAKVLR EQATKKISST MLEITCYSCR 360 QRFEAATNHA AATTADETSI APSYMSSALT EGEGD

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MLDNHHHHHH FTTAAGPGPG PSSSDLFPSQ DNGLPNKRKR RPAGTPDPDA EVVSLSPKTL  60
LESDQYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRDSP EVKKRVFVCP EPSCLHHDPC  120
HALGDLVGIK KHFRRKHSNN KQWVCDKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDA CTVRRIHADL PGFQPACSSR TASSTSPSND MNFSSIPTIP RLPHIQPPPQ  240
TVFSQTHEDI QNNLELQLLP SLSLYEQNNT HQTHLNLSIG SGLSLHREEE LKIAMADKAF  300
AEDARNQAKK QIEMAEMEFE NAKRIRQQAQ VELERAKVLR EQATKKISST MLEITCYSCR  360
QRFEAATNHA AATTADETSI APSYMSSALT EGEGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	42	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-139	C2H2 family protein