PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961852.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 223aa    MW: 25310.6 Da    PI: 5.8357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-0970118354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +++  rEr+RR+++N++f eL + l +    +    +K +iL  A++ +++L
  XP_024961852.1  70 ENKACRERQRREKLNDRFLELSSTLEPG---RPASTDKWAILGDAIRVLNQL 118
                     56789**********************7...7788**************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MDPFGDTNWD LIDYNSLIND VASTDLYWGD QSATVSLDTS LASFAPPEKE SAEKECTRKR  60
GRSISCNRAE NKACRERQRR EKLNDRFLEL SSTLEPGRPA STDKWAILGD AIRVLNQLKS  120
ESQDCKEMNE KLLEEIKTLK AEKNELREEK LVLKAEKAKM EQQVKAMTNL PPSGFMTPHP  180
AAYQAGASKM PIFPGYSYIP MWQYLPQSTR DTSHDHELRP PAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.29e-63bHLH family protein