PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961887.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 234aa MW: 26214.6 Da PI: 5.2216

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	81	127	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++RRd++N++f+eL e+l + +s K +K iL+ A++ + +L XP_024961887.1 81 KACREKKRRDKLNERFQELNEILDPG---RSYKTDKTVILTDAIRMVVQL 127 678********************9...9************988776 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MAAPAEDDGS NCFFDFSLIE QFPVPGGELP SLEPDFHWSS DPFPDSTEIS NGFVDSVGRS 60 NTTKEDESRK RPNPGSSSDS KACREKKRRD KLNERFQELN EILDPGRSYK TDKTVILTDA 120 IRMVVQLRNE ASQLKDSSQD MVVKINELKV EKNELRDEKQ KLKADKERLE QQLKACCAPP 180 TAFYPPAHPV MQMPPAVGGK FMPIMGFQGV PMWPFATPTA VDTSKDHVLR SPLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	89	RKRPNPGSSSDSKACREKKRR
2	86	91	KKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	1e-63	bHLH family protein