PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961952.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 267aa MW: 30444.9 Da PI: 7.3864

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.5e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+++LGG+ekAtPk +l++m+v gLt++hvkSHLQ+YR+ XP_024961952.1 19 PRLRWTPDLHHSFVHAIDRLGGPEKATPKLVLQMMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP
2	Myb_DNA-binding	47.1	5.3e-15	20	71	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT++++ +v+a+ +lGg+ t+k++ ++m g+t ++ks++q+y+ XP_024961952.1 20 RLRWTPDLHHSFVHAIDRLGGPekaTPKLVLQMMDvRGLTISHVKSHLQMYR 71 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MGSCGRNGAV RQYIRSKVPR LRWTPDLHHS FVHAIDRLGG PEKATPKLVL QMMDVRGLTI 60 SHVKSHLQMY RSMKSDGNKQ DEDLNSIGSH RRQSLEDHHD GCLDHEHHLK PTIQDSDSHF 120 IYTLPSKRCR METRNGKHEW WENGEQIEQE EAIGNLTWQQ PSLSFSFPHF LMHPSFTHVN 180 ALHPESDFLK IFEHCGSPKR RKLEGSRSTE DEDGLLKLSL HHHSTQRSSN GSSSSEMSEV 240 YSRPNVNDGS LNKCSVNLDL SIALSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	3e-33	G2-like family protein