PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961956.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 521aa    MW: 58383.3 Da    PI: 5.5044
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.15.4e-921625202374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++Ae++++++ +laq ++arl+++ ++p+g+++qR+a+yf+eAL++ l++       +  ++++s+++ +++++a+k+fs+vsPi+ fs 
  XP_024961956.1 162 VDELIRIAECFETRSIQLAQVIMARLNQRlRAPTGKALQRAAFYFKEALQSLLTG------PTRMTQSSSSSEIVQAIKAYKTFSNVSPIPMFSD 250
                     678*************************99*************************......3334455555679********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+leav+g+  vH+iDfdi+ G+ W+++++++a+++      +p +RiT+v+++e   ++e + ++++L +fA+ l+++f+++++  +++
  XP_024961956.1 251 FTANQAMLEAVDGAMIVHVIDFDIGLGGRWASFMKEIAEKAesrkVHSPAVRITAVVPEE--YETESKLIRDNLWQFARGLKLRFDIDFVSFRNF 343
                     **************************************8884444569**********66..999*************************999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsl.eaklpre 278
                     e l+++++++  gE++aV l+  +++              +++ ++ +sP+v+vvv+ e  +  + + F + +++ le+ys+l++sl +a+++  
  XP_024961956.1 344 EYLSFKAIKFMDGEKTAVLLSSTVFHRI---------GAGFINDLRLISPHVIVVVDGEGLMggEPSFFRQTVIDGLEFYSTLLESLeAANVGGG 429
                     *******************999887776.........247*******************7774244478899***************77787765 PP

            GRAS 279 s..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        ++ +k+E ++l ++i+ +v ++g++       + +Wre++++ G+++v +s++a  qa++llr+v+++g++v ++++++vl+W+drpLv++S
  XP_024961956.1 430 GgnDWIRKIEMFVLLPKITAAVEASGRQ-------VPSWREAFSRTGMRAVGMSQFADFQAECLLRRVQVRGFHVVKRQAEMVLCWHDRPLVATS 517
                     444999********************98.......99********************************************************** PP

            GRAS 372 aWr 374
                     aWr
  XP_024961956.1 518 AWR 520
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    
MKLPFASSQN NLSSSTNVKQ EVTAGGSNRY EPKSVLDVRR SPPSPITGKP SEFNSTDHTS  60
VVFSSLEDPL PLDNIEHGMI HQFEEWDSLM RELGLHDDST KSAYPLDLPE LPPIHTEATA  120
PPTAMFFHSD FENLNPNLNA LDFMSQDDDD SNNNNGNRFD FVDELIRIAE CFETRSIQLA  180
QVIMARLNQR LRAPTGKALQ RAAFYFKEAL QSLLTGPTRM TQSSSSSEIV QAIKAYKTFS  240
NVSPIPMFSD FTANQAMLEA VDGAMIVHVI DFDIGLGGRW ASFMKEIAEK AESRKVHSPA  300
VRITAVVPEE YETESKLIRD NLWQFARGLK LRFDIDFVSF RNFEYLSFKA IKFMDGEKTA  360
VLLSSTVFHR IGAGFINDLR LISPHVIVVV DGEGLMGGEP SFFRQTVIDG LEFYSTLLES  420
LEAANVGGGG GNDWIRKIEM FVLLPKITAA VEASGRQVPS WREAFSRTGM RAVGMSQFAD  480
FQAECLLRRV QVRGFHVVKR QAEMVLCWHD RPLVATSAWR F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-128GRAS family protein