PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961982.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24884.5 Da    PI: 8.7421
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-291059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCda+va+iifs++gkl e++s
  XP_024961982.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVALIIFSPRGKLCEFAS 59
                    8***********************************************86 PP
2K-box75.11.9e-2579172497
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      +++s e+a++++l++e a + k+ie L+  +R+l Ge+L+s ++ eLqq+eqqLe+s+  iR++K++++ eq+eelq kek l ++n +L+ k
  XP_024961982.1  79 ENSSSIEDAQWQHLKNETASMAKKIEALELAKRKLSGEGLGSSTIDELQQIEQQLERSVCIIRARKMQVYNEQJEELQAKEKILASQNAMLNVK 172
                     4455599***********************************************************************************9866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVALIIFSP RGKLCEFASS  60
SMEETIQRYT NHVKDIQTEN SSSIEDAQWQ HLKNETASMA KKIEALELAK RKLSGEGLGS  120
STIDELQQIE QQLERSVCII RARKMQVYNE QJEELQAKEK ILASQNAMLN VKCVVRPQEK  180
MEEGRASLQM TECGESSDVE TELFIGLPEK RTRFNKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-69MIKC_MADS family protein