PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962119.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 507aa MW: 56657.8 Da PI: 8.7055

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_024962119.1 58 YICEVCHKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	13	0.0003	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_024962119.1 135 WKCDKCSKRYAVQSDWKAHAKIC 157 58*****************9987 PP
3	zf-C2H2	10.8	0.0015	165	183	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_024962119.1 165 DCGTIFSRKDSFVTHRAFC 183 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MSNFVQDFQD DDDEQFPTTT LMQASHGSPE NSIHPTNSDP EAEVVALSPR TLMATNRYIC 60 EVCHKGFQRD QNLQLHRRGH NLPWKLKQRP ANIQVKKRVY VCPEPNCVHH EPTRALGDLT 120 GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKICGTR EYRCDCGTIF SRKDSFVTHR 180 AFCDALTEEN YKMNLKVGAT GGVLQELSGS CTNTNIMSIS NHDKSLSLNS HMLNDHMDTM 240 FNQRTMRPCF SSSVVGANNS PMVAYTSATA LLQKAAEMGA KVSDNTITPI LLRGFTGYST 300 SSFNSSTISV RHVSSMDNCN NSGLHAVNPE LFDKNMEIGR NGRTGYGIST TTESGLYDSS 360 LLMHSSKENS GNLLERQVFM GGGERTTVDF LGVEPGGHSS LCGKRDYDVS LPYSHEHQSL 420 HQQQSDCHRT TVLLFNKARI PFASSDASSN LHYQNYPLFR RQLRRKLVFP ADLSAGKRAP 480 VIRFPSSFPA DALFFQRIPA VGNLSPT

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MSNFVQDFQD DDDEQFPTTT LMQASHGSPE NSIHPTNSDP EAEVVALSPR TLMATNRYIC  60
EVCHKGFQRD QNLQLHRRGH NLPWKLKQRP ANIQVKKRVY VCPEPNCVHH EPTRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKICGTR EYRCDCGTIF SRKDSFVTHR  180
AFCDALTEEN YKMNLKVGAT GGVLQELSGS CTNTNIMSIS NHDKSLSLNS HMLNDHMDTM  240
FNQRTMRPCF SSSVVGANNS PMVAYTSATA LLQKAAEMGA KVSDNTITPI LLRGFTGYST  300
SSFNSSTISV RHVSSMDNCN NSGLHAVNPE LFDKNMEIGR NGRTGYGIST TTESGLYDSS  360
LLMHSSKENS GNLLERQVFM GGGERTTVDF LGVEPGGHSS LCGKRDYDVS LPYSHEHQSL  420
HQQQSDCHRT TVLLFNKARI PFASSDASSN LHYQNYPLFR RQLRRKLVFP ADLSAGKRAP  480
VIRFPSSFPA DALFFQRIPA VGNLSPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-101	C2H2 family protein