PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962176.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 926aa MW: 105796 Da PI: 7.2476

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.6	1.4e-50	32	148	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k+rwl+++ei+aiL n++ ++++ ++ + p+sg+++L++rk++r+fr+DG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+++tf r XP_024962176.1 32 EEaKTRWLRPNEIHAILCNHNYFNIHVKPMNLPRSGTIVLFDRKMLRNFRRDGHNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAHGEDQTTFVR 126 5559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy++++ XP_024962176.1 127 RCYWLLDKKLEHIVLVHYRDTQ 148 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence
MEPVIPSQLQ LVGPEIHGFK TMQDLDVPTM FEEAKTRWLR PNEIHAILCN HNYFNIHVKP 60 MNLPRSGTIV LFDRKMLRNF RRDGHNWKKK KDGKTVKEAH EHLKVGNDER IHVYYAHGED 120 QTTFVRRCYW LLDKKLEHIV LVHYRDTQEL QGSPNFESNA SSDPPTSWNL SEENEGIDQV 180 HYAEPNETII NHEMRLHEIN TLDWDELVVV DGPNKLITPE RGNISYFDQD YQYGMLQGND 240 TSLQNNSTFV HKLLTDDQSA TFRPGTVGEG NTYDLSFSNM NIQRTGIREH SNLQMDPKLV 300 NVSTDSLDTL GKDGMENEDS FGRWMNYTMT DSPVVIDGPT LTPERLVSTG QGTVRPPSGY 360 NQQSHSLQQI FSITDISPSW ASSNEETKIL VVGVFHEEHR HLANSNLFCV CGDVCLPVEV 420 VQSGVFRCFV SRHSPGIVNL FISYDGHKPI SQVMAFEYRA PPINKSIISS EEKSEWEDFQ 480 NTMRLAHLLF SSSRSLNILS SKVPAKALKE AKIFAHRTRS IVNSWDVLIN SITGTRISFQ 540 RAKSSLLELT LQTRLLEWLL ERILDGGKIP DRDVRGQGVI HLCAILDYTW AMFPYSWSGL 600 SIDFRDKLGW TALHWAAYYG RQKSVASLLS AGANPNLVTD PTSENPGGCT PADLASKSGY 660 EGLAAFLAEK ALLAHFEAMT LAGNVSGSLQ CTIPTDDDFT TNGPVTEVNE EEQYLKDTLS 720 AYRRAADAAA RIQAAFREQS FKLKTKALEF VNAEDEARCI IAAMRIQHAF RHYETKKQMA 780 AAVRIQHRFR TWKIRKDFLN KRRQAIKIQA FFRGLQVRRE YKKILWSVGV LEKAIIRWRL 840 KRKGFRGLEV APIPNEDEKQ EISGEEEFFK SSRKQAEERV ERSVVRVQAM FRSKRAQEEY 900 RKMKLALNQA GVEYEELSNP VTNMER

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence

MEPVIPSQLQ LVGPEIHGFK TMQDLDVPTM FEEAKTRWLR PNEIHAILCN HNYFNIHVKP  60
MNLPRSGTIV LFDRKMLRNF RRDGHNWKKK KDGKTVKEAH EHLKVGNDER IHVYYAHGED  120
QTTFVRRCYW LLDKKLEHIV LVHYRDTQEL QGSPNFESNA SSDPPTSWNL SEENEGIDQV  180
HYAEPNETII NHEMRLHEIN TLDWDELVVV DGPNKLITPE RGNISYFDQD YQYGMLQGND  240
TSLQNNSTFV HKLLTDDQSA TFRPGTVGEG NTYDLSFSNM NIQRTGIREH SNLQMDPKLV  300
NVSTDSLDTL GKDGMENEDS FGRWMNYTMT DSPVVIDGPT LTPERLVSTG QGTVRPPSGY  360
NQQSHSLQQI FSITDISPSW ASSNEETKIL VVGVFHEEHR HLANSNLFCV CGDVCLPVEV  420
VQSGVFRCFV SRHSPGIVNL FISYDGHKPI SQVMAFEYRA PPINKSIISS EEKSEWEDFQ  480
NTMRLAHLLF SSSRSLNILS SKVPAKALKE AKIFAHRTRS IVNSWDVLIN SITGTRISFQ  540
RAKSSLLELT LQTRLLEWLL ERILDGGKIP DRDVRGQGVI HLCAILDYTW AMFPYSWSGL  600
SIDFRDKLGW TALHWAAYYG RQKSVASLLS AGANPNLVTD PTSENPGGCT PADLASKSGY  660
EGLAAFLAEK ALLAHFEAMT LAGNVSGSLQ CTIPTDDDFT TNGPVTEVNE EEQYLKDTLS  720
AYRRAADAAA RIQAAFREQS FKLKTKALEF VNAEDEARCI IAAMRIQHAF RHYETKKQMA  780
AAVRIQHRFR TWKIRKDFLN KRRQAIKIQA FFRGLQVRRE YKKILWSVGV LEKAIIRWRL  840
KRKGFRGLEV APIPNEDEKQ EISGEEEFFK SSRKQAEERV ERSVVRVQAM FRSKRAQEEY  900
RKMKLALNQA GVEYEELSNP VTNMER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein