PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962242.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WOX
Protein Properties Length: 309aa    MW: 34854.2 Da    PI: 7.0798
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-203091257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+t+t++q+++L+el+++   r p+a++++++A++l    +++ ++V++WFqN++a+e++
  XP_024962242.1 30 STRWTPTSDQIRILKELYYNngIRSPTADQIQRIAAQLrqygKIEGKNVFYWFQNHKARERQ 91
                    58*****************8567*************************************97 PP
2Wus_type_Homeobox1147.5e-372993265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_024962242.1 29 SSTRWTPTSDQIRILKELYYnNGIRSPTADQIQRIAAQLRQYGKIEGKNVFYWFQNHKARERQKK 93
                       789***************9779*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
METQQQQQQQ TDIQDLGNKN SSSYVCRQSS TRWTPTSDQI RILKELYYNN GIRSPTADQI  60
QRIAAQLRQY GKIEGKNVFY WFQNHKARER QKKRFTPAPP PPSSTTTLLP SPFSDHTHQH  120
INHHLPTAAA MQIQSHHPHY HHQEPPHVYS HQHKLYTTHH IGVGSSSSSS QGVMAVGCGY  180
GSVAMEKSFR ECSISPPEES MATGGVGRNF GSRSRVGVDS CSFFDTIKPT TYDILENHNQ  240
DEEQEEGETS TQIETLPLFP IHGGTHHDFF SMKSADLSSD GGYYTGGNWY RSDGRASLEL  300
SLNSYGYYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-43WOX family protein