PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962243.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 345aa MW: 39271.4 Da PI: 6.7006

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ g+ R+ k+c++rw +yl XP_024962243.1 14 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.1	6.2e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_024962243.1 67 RGSFTEQEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGSF TEQEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLDKLH 120 EKSDEESDYH HHHHGTSKGR HSSSSSETTI SKGQWERRLQ TDIHMAKQAL CEALSLDNKS 180 INLPELSSCT NSAKPQSVLP PSNQSTTTYA SSAENIARLL PNWMKDSKKS SQTSTESIET 240 TQARSSLTNQ QFPSPPSEGY DNSQQFDYNN DLIHNHQKNN YYSNYSNSDV SQSVSPETSV 300 FQDESKPNME DQMPPLSLLE KWLFDEASAQ VDLMNMSLQE SDDFF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGSF TEQEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLDKLH  120
EKSDEESDYH HHHHGTSKGR HSSSSSETTI SKGQWERRLQ TDIHMAKQAL CEALSLDNKS  180
INLPELSSCT NSAKPQSVLP PSNQSTTTYA SSAENIARLL PNWMKDSKKS SQTSTESIET  240
TQARSSLTNQ QFPSPPSEGY DNSQQFDYNN DLIHNHQKNN YYSNYSNSDV SQSVSPETSV  300
FQDESKPNME DQMPPLSLLE KWLFDEASAQ VDLMNMSLQE SDDFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	3e-99	MYB family protein