PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962343.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 200aa MW: 23226.1 Da PI: 7.9307

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.3	1.1e-24	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCdae+ + ifs +gklye + XP_024962343.1 10 RIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 8*********************************************965 PP
2	K-box	47.2	9.3e-17	82	172	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++e++ +++ e++ Lk+eie Lq+ +R + + ++++l eL+ Le++Le + +iRs K++++ ++i+ l++ke l+ +nk+L++++e XP_024962343.1 82 ADEKQVLESKMEVNMLKNEIEVLQKGLRYMFEGGAGKMTLDELRILENNLEVWMYHIRSAKMDIMSQEIQLLKNKEGILKAANKCLQEQME 172 567888899******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MARGKVQMRR IENPVHRQVT FCKRRSGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATN 60 GSMQGLLEKY MKSTRCYVEE QADEKQVLES KMEVNMLKNE IEVLQKGLRY MFEGGAGKMT 120 LDELRILENN LEVWMYHIRS AKMDIMSQEI QLLKNKEGIL KAANKCLQEQ MEMQYDAANT 180 DPIMTNIPYP LTVQNEIYQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	2e-75	MIKC_MADS family protein