PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962379.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 266aa    MW: 29579.3 Da    PI: 8.5812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-1058104354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h   Er+RR+riN+ ++ Lr+  P +      K +Ka++L+++v+ +k+L
  XP_024962379.1  58 QKHAFSERKRRKRINNHYDSLRQFFPRL-----LKTDKASVLTETVRRLKEL 104
                     578899*********************6.....5*************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MASSRGYDGI HRTLGNHEDQ EKNKLSNNEA YSGDSYSSTV QGLTTTTKLR TMLELAAQKH  60
AFSERKRRKR INNHYDSLRQ FFPRLLKTDK ASVLTETVRR LKELKNMVVD VSQSHDDGGR  120
CSGNGSQRSF FIPDENDEMT VRYCGSGNNK TVRVIICCED RPGLIQDMTE TIQSVHGKAV  180
KAEMATVGGR TKAEVVVEWP ECGGGGEDDV ESLKRALKAV VENRVLGQSR LMGNGCTEPE  240
LIGLGRGPKV YDQRENRLAD GLIIRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.15e-28bHLH family protein