PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962388.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 419aa    MW: 47805.7 Da    PI: 7.0008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.74.8e-90404183374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshl 96 
                     +lL ecA+a+s++d +++++lL+ l+elas++gd  q+la+yf++AL  ++++s++++yk+l + +++++   +++  l l f+evsP+ +f+ +
  XP_024962388.1  40 RLLQECAHAISQKDSAKIHHLLWMLNELASSYGDFDQKLASYFMKALFCKVMESGQGCYKKLVSVADKSNCCFDSARNLVLkFQEVSPWTTFGRV 134
                     6899**********************************************************99999977766665555557************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrled 188
                     ++N aIlea++ge+++HiiD + + ++QWp+Ll+aLa+R++++psl++T+v+  +   +  ++e+++r+ kfA+ +gvpfef+v+     ++l +
  XP_024962388.1 135 ACNGAILEAFDGETKLHIIDVSNTLCTQWPTLLEALATRSNQTPSLKLTVVVT-NIMARSLMKEIAQRMDKFAHLMGVPFEFKVIctkSNQTLGQ 228
                     *****************************************************.5569999***********************97644558999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpresee 281
                     l+ eeL v+ +E++aVn++  l r+      +e+ r +v+kl+ sl+P+vv++ve+ead   ++++F + f+e+l++y+  f++le+++ ++s+e
  XP_024962388.1 229 LTKEELGVEVNETIAVNCIGGLTRVE-----VEE-RGDVIKLFSSLKPRVVTIVEEEADFtsTRSDFINCFAECLRFYTLYFEMLEESFTPTSNE 317
                     9***********************97.....444.889*******************998556679***************************** PP

            GRAS 282 rikvErellgreivnvvacegae.....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee....sgslvlgWkdrp 366
                     r  +Er   +r+iv v++c  +e       er+e+ ++W erl++  F+p+ +s++++++ ++llr++  ++   v++     +  ++l Wk++p
  XP_024962388.1 318 RLILERG-CSRSIVRVLSCDDKEimnlgECERREKGSQWCERLKT-RFSPLGFSDDVVDDLNSLLRRYRtGWSLAVDQTssniDSGIYLAWKEEP 410
                     *******.89**********99855444579************86.5**********************5555555544566688899******* PP

            GRAS 367 LvsvSaWr 374
                     +v++S+W+
  XP_024962388.1 411 VVWASVWK 418
                     *******8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MKRKRFSPYT NHRKIQTTSK GKSSYTSFEY SDDGDKWAYR LLQECAHAIS QKDSAKIHHL  60
LWMLNELASS YGDFDQKLAS YFMKALFCKV MESGQGCYKK LVSVADKSNC CFDSARNLVL  120
KFQEVSPWTT FGRVACNGAI LEAFDGETKL HIIDVSNTLC TQWPTLLEAL ATRSNQTPSL  180
KLTVVVTNIM ARSLMKEIAQ RMDKFAHLMG VPFEFKVICT KSNQTLGQLT KEELGVEVNE  240
TIAVNCIGGL TRVEVEERGD VIKLFSSLKP RVVTIVEEEA DFTSTRSDFI NCFAECLRFY  300
TLYFEMLEES FTPTSNERLI LERGCSRSIV RVLSCDDKEI MNLGECERRE KGSQWCERLK  360
TRFSPLGFSD DVVDDLNSLL RRYRTGWSLA VDQTSSNIDS GIYLAWKEEP VVWASVWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-124GRAS family protein