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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_024962388.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 419aa MW: 47805.7 Da PI: 7.0008 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 293.7 | 4.8e-90 | 40 | 418 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshl 96
+lL ecA+a+s++d +++++lL+ l+elas++gd q+la+yf++AL ++++s++++yk+l + +++++ +++ l l f+evsP+ +f+ +
XP_024962388.1 40 RLLQECAHAISQKDSAKIHHLLWMLNELASSYGDFDQKLASYFMKALFCKVMESGQGCYKKLVSVADKSNCCFDSARNLVLkFQEVSPWTTFGRV 134
6899**********************************************************99999977766665555557************* PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrled 188
++N aIlea++ge+++HiiD + + ++QWp+Ll+aLa+R++++psl++T+v+ + + ++e+++r+ kfA+ +gvpfef+v+ ++l +
XP_024962388.1 135 ACNGAILEAFDGETKLHIIDVSNTLCTQWPTLLEALATRSNQTPSLKLTVVVT-NIMARSLMKEIAQRMDKFAHLMGVPFEFKVIctkSNQTLGQ 228
*****************************************************.5569999***********************97644558999 PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpresee 281
l+ eeL v+ +E++aVn++ l r+ +e+ r +v+kl+ sl+P+vv++ve+ead ++++F + f+e+l++y+ f++le+++ ++s+e
XP_024962388.1 229 LTKEELGVEVNETIAVNCIGGLTRVE-----VEE-RGDVIKLFSSLKPRVVTIVEEEADFtsTRSDFINCFAECLRFYTLYFEMLEESFTPTSNE 317
9***********************97.....444.889*******************998556679***************************** PP
GRAS 282 rikvErellgreivnvvacegae.....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee....sgslvlgWkdrp 366
r +Er +r+iv v++c +e er+e+ ++W erl++ F+p+ +s++++++ ++llr++ ++ v++ + ++l Wk++p
XP_024962388.1 318 RLILERG-CSRSIVRVLSCDDKEimnlgECERREKGSQWCERLKT-RFSPLGFSDDVVDDLNSLLRRYRtGWSLAVDQTssniDSGIYLAWKEEP 410
*******.89**********99855444579************86.5**********************5555555544566688899******* PP
GRAS 367 LvsvSaWr 374
+v++S+W+
XP_024962388.1 411 VVWASVWK 418
*******8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 419 aa Download sequence |
MKRKRFSPYT NHRKIQTTSK GKSSYTSFEY SDDGDKWAYR LLQECAHAIS QKDSAKIHHL 60 LWMLNELASS YGDFDQKLAS YFMKALFCKV MESGQGCYKK LVSVADKSNC CFDSARNLVL 120 KFQEVSPWTT FGRVACNGAI LEAFDGETKL HIIDVSNTLC TQWPTLLEAL ATRSNQTPSL 180 KLTVVVTNIM ARSLMKEIAQ RMDKFAHLMG VPFEFKVICT KSNQTLGQLT KEELGVEVNE 240 TIAVNCIGGL TRVEVEERGD VIKLFSSLKP RVVTIVEEEA DFTSTRSDFI NCFAECLRFY 300 TLYFEMLEES FTPTSNERLI LERGCSRSIV RVLSCDDKEI MNLGECERRE KGSQWCERLK 360 TRFSPLGFSD DVVDDLNSLL RRYRTGWSLA VDQTSSNIDS GIYLAWKEEP VVWASVWKP |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G37650.1 | 1e-124 | GRAS family protein | ||||




