PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962491.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 353aa MW: 39893.1 Da PI: 7.5895

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_024962491.1 13 RGLWSPEEDEKLIKQITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_024962491.1 66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIKQITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLRRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLSP HQIPILNANN SKHSYDPTKP VFSIINNASS QTKDAKRFSS LRPHSSADTN 180 DPVMTHNLYE NSLTHPTSNL HNQDYNFVFK NDVSHQSTMG FSTRPLVEST KMPILLPLSS 240 SPPPPNPLEF GTLVQSWGSN SNLGVGFEQT RRAEDQYQEM LQMPQMVCPQ EFVNKGLDLR 300 GGDHHVEGGQ TNMDMITSFD GCNIDLEFME AALMPCGMYS NLGSLDQLAW DCN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLIKQITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLSP HQIPILNANN SKHSYDPTKP VFSIINNASS QTKDAKRFSS LRPHSSADTN  180
DPVMTHNLYE NSLTHPTSNL HNQDYNFVFK NDVSHQSTMG FSTRPLVEST KMPILLPLSS  240
SPPPPNPLEF GTLVQSWGSN SNLGVGFEQT RRAEDQYQEM LQMPQMVCPQ EFVNKGLDLR  300
GGDHHVEGGQ TNMDMITSFD GCNIDLEFME AALMPCGMYS NLGSLDQLAW DCN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-83	MYB family protein