PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962506.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 282aa MW: 32306.6 Da PI: 6.4045

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53	8.3e-17	120	170	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +grW+AeI+dp + +r +lg+++t++eA +++a+ kl g XP_024962506.1 120 KKFRGVRKRR-WGRWAAEIMDPI----ThQRLWLGTYDTPDEASMVYDNAAIKLCG 170 59***887.******82....47*********************9977 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MEDCFMFTPI KQTEHKRRIT KEVPAMSEKF FDQEEFPFPK VIRISMTDPY ATDSSEDEDD 60 HIFERWCVKK YVNEINIQPS SKARMMPVNA NMTTTRNSPC AADSKQRTIK KKKTPEDIVK 120 KFRGVRKRRW GRWAAEIMDP ITHQRLWLGT YDTPDEASMV YDNAAIKLCG AGAITNFVLP 180 MTIEKPPPTN ITSMSNHHPK QKSPKLPLAD APPSDYQSFD SIQLDDEVAS FDMHHEFRSI 240 NPKQFDDFGR TPIAPGFIPE TGCGSPSTLK IDNYFEDISD ST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	129	KKKKTPEDIVKKFRGVRKRR
2	111	130	KKKKTPEDIVKKFRGVRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	1e-38	ERF family protein