PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962589.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 390aa MW: 42928.3 Da PI: 5.5797

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	5.9e-31	212	270	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ XP_024962589.1 212 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 270 699**********************998**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MENNYQGDLA DIFRPGSVNS GDPPGVSDWQ YFDQSSDQET QMIQKSIRTH EQGFGQPFTS 60 LLTDPLIHEG TSTPCFFGTN LDDLEEQVVS AARTPLEYED HKINDNNNNH NHNHSHNIFS 120 KMLQISPNAV KSTLSSNSDI MITSSPSPSP SSSSVVPPIK RCLLETSSAT TLQISSPRNP 180 GIKRRKSQAK KVVCIPAPAP ANSRPTGEVV PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS 240 KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRTPQPPKT TAEQPSSEKH 300 TTTEDVAAGS HVKDESSQAI LLETEKLGLG SFPQSYRPEL PEHGSGVDQD FFSSLGEIEV 360 DPISMLLNQG FLGGDEEEAE NYNKDLDPFG

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MENNYQGDLA DIFRPGSVNS GDPPGVSDWQ YFDQSSDQET QMIQKSIRTH EQGFGQPFTS  60
LLTDPLIHEG TSTPCFFGTN LDDLEEQVVS AARTPLEYED HKINDNNNNH NHNHSHNIFS  120
KMLQISPNAV KSTLSSNSDI MITSSPSPSP SSSSVVPPIK RCLLETSSAT TLQISSPRNP  180
GIKRRKSQAK KVVCIPAPAP ANSRPTGEVV PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS  240
KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRTPQPPKT TAEQPSSEKH  300
TTTEDVAAGS HVKDESSQAI LLETEKLGLG SFPQSYRPEL PEHGSGVDQD FFSSLGEIEV  360
DPISMLLNQG FLGGDEEEAE NYNKDLDPFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	4e-79	WRKY family protein