PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962593.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 190aa    MW: 21155.6 Da    PI: 4.5876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-173787155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GV+++  +g+Wv+e+r+p++   + r++lg++ tae+Aa+a++ a ++++g
  XP_024962593.1 37 PVYRGVSRRN-SGKWVCEVREPNT---KNRVWLGTHPTAEMAARAHDVAVLAMRG 87
                    68*****888.8******999843...49************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MEDTASPSAY LDGEVMLAEN NPKKKAGRKK FKETRHPVYR GVSRRNSGKW VCEVREPNTK  60
NRVWLGTHPT AEMAARAHDV AVLAMRGRSA CLNFADSPSR LPIPVSNDIK DIQKAAAEAA  120
EAFRPREDAE EIEEGKESAE SSIFVDEEEI YEMPDFLASM AEGLMISPPR IDDLTDDVEC  180
GDDGSLWSFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-57ERF family protein