PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962930.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 281aa MW: 29699.4 Da PI: 9.5011

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	110	122	15	27
-TTTTT-SS-SSS CS zf-CCCH 15 CkyGdrCkFaHgp 27 Ck+Gd+C+FaH++ XP_024962930.1 110 CKFGDKCRFAHSE 122 ***********95 PP
2	zf-CCCH	26.5	1.1e-08	251	276	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +f + G C +G+rC+FaHgp XP_024962930.1 251 FKTKMCENFGK-GLCTFGERCHFAHGP 276 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MDFGGRKRGR QDGGWNGAPK RARDEMESFT PGVGSKSKPC TKFFSTSGCP FGEGCHFLHY 60 VPGGYHAPSP LTNMGGPLGR KSQMQQPFTD GLAPAVKNKL CNKINTPEGC KFGDKCRFAH 120 SEAEIGGRPS FPGYENQRGP MNYGGGGYQA SPPGLAGANF GQSATAKISI DASLAGAVIG 180 KGGVNSKQIC RITGVKLAIR DHETDENQKN IELEGSFDQI KQASAMVREV IMNLGGGNGG 240 ARKGGGGGNN FKTKMCENFG KGLCTFGERC HFAHGPNELR T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	1e-70	C3H family protein