PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963009.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 578aa MW: 64050.5 Da PI: 6.8221

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.2	3.1e-16	266	325	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_024963009.1 266 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 325 78*****************988886678446***********************98 PP
2	AP2	45.1	2.5e-14	368	419	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++ grW A+I + +k +lg+f t e+Aa+a++ a+ k++g XP_024963009.1 368 SVYRGVTRHHHHGRWQARIGRVAG---NKDLYLGTFSTQEDAAEAYDVAAIKFRG 419 78**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MTTNNNNDNN GNNKNSENWL GFSLSPQSSH PSSSNPTTFF SLPSHFNYQN LYCGGAEGVH 60 GGGIYSAFPI MPLKSDGSLC LMDAITRSHS QGMVSSTPPP KLENFFGGVT MGAPDLDSSS 120 TMYYHQNLDH HHHHHHQNYQ IQPPNYLDYN GLYQSIQQDQ ETKDSQQVAA DGIYLPTVTV 180 GEDDITTGIK NWISTTYNHS GGGGLQSLSL SMSPGCSQSS SCVTGSQQQI TTVVMDSKKR 240 GSEKVDQQQK QIVHRKSLDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ 300 VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYEQE LEEMKNMSRQ EYVAHLRRRS 360 SGFSRGASVY RGVTRHHHHG RWQARIGRVA GNKDLYLGTF STQEDAAEAY DVAAIKFRGV 420 NAVTNFDISR YNVEKIMASN TLLAGELARR TKDPDPCTDQ VLSTQTHNGQ ETKTISNETT 480 TNGSMLDWKM ELYDQTIGGG GAAALEEDES STTRNHLLIT SGTGGGYQED SPKNDNFPMV 540 LGEVAASKSM NTWIPTATAT ATSQVRSHIP MFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MTTNNNNDNN GNNKNSENWL GFSLSPQSSH PSSSNPTTFF SLPSHFNYQN LYCGGAEGVH  60
GGGIYSAFPI MPLKSDGSLC LMDAITRSHS QGMVSSTPPP KLENFFGGVT MGAPDLDSSS  120
TMYYHQNLDH HHHHHHQNYQ IQPPNYLDYN GLYQSIQQDQ ETKDSQQVAA DGIYLPTVTV  180
GEDDITTGIK NWISTTYNHS GGGGLQSLSL SMSPGCSQSS SCVTGSQQQI TTVVMDSKKR  240
GSEKVDQQQK QIVHRKSLDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ  300
VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYEQE LEEMKNMSRQ EYVAHLRRRS  360
SGFSRGASVY RGVTRHHHHG RWQARIGRVA GNKDLYLGTF STQEDAAEAY DVAAIKFRGV  420
NAVTNFDISR YNVEKIMASN TLLAGELARR TKDPDPCTDQ VLSTQTHNGQ ETKTISNETT  480
TNGSMLDWKM ELYDQTIGGG GAAALEEDES STTRNHLLIT SGTGGGYQED SPKNDNFPMV  540
LGEVAASKSM NTWIPTATAT ATSQVRSHIP MFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-124	AP2 family protein