PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963013.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 381aa MW: 41227.2 Da PI: 8.9575

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76	3.8e-24	118	160	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrC+RtDGKkWRCsr+v +++k+C+rH+hrgr rsrk++e XP_024963013.1 118 LEPGRCKRTDGKKWRCSRDVAPNQKYCDRHMHRGRPRSRKHVE 160 69***************************************98 PP
2	QLQ	54.5	3.6e-19	54	87	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FTaaQ+ +L++Q+++yKy++a++PvP +Ll++i XP_024963013.1 54 PFTAAQWKELERQAMIYKYMVASVPVPYQLLLPI 87 8*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MIIIPLSPLF LPLSAFFLLS FTPKPLLTFL IPQPPSNSKT GGGCIIMAAT LGFPFTAAQW 60 KELERQAMIY KYMVASVPVP YQLLLPIIQN LPPAAAAAAS ASRSPLVSQL RYSTKQDLEP 120 GRCKRTDGKK WRCSRDVAPN QKYCDRHMHR GRPRSRKHVE LSKNPSPSSS LLPNKTPSLH 180 SNPCKVAGST ILPSVTQPSL FLDDMQSNKR GSDWSTEQQW RQIMQTSRSI FNDDFGEEQP 240 SFTDFGTSHD YLLSETPRRD FIDAWSTNKS TVIKDSSGDL SPSALDLSMA MALGNNGFGE 300 LGVCKVSGLV SPVSCGGGPL AEVLRPSLVG VCSIPTSPAG SSPSGVLQRT MPSVSDSSVC 360 NSAIVAASST PTDIVAFQWF T

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MIIIPLSPLF LPLSAFFLLS FTPKPLLTFL IPQPPSNSKT GGGCIIMAAT LGFPFTAAQW  60
KELERQAMIY KYMVASVPVP YQLLLPIIQN LPPAAAAAAS ASRSPLVSQL RYSTKQDLEP  120
GRCKRTDGKK WRCSRDVAPN QKYCDRHMHR GRPRSRKHVE LSKNPSPSSS LLPNKTPSLH  180
SNPCKVAGST ILPSVTQPSL FLDDMQSNKR GSDWSTEQQW RQIMQTSRSI FNDDFGEEQP  240
SFTDFGTSHD YLLSETPRRD FIDAWSTNKS TVIKDSSGDL SPSALDLSMA MALGNNGFGE  300
LGVCKVSGLV SPVSCGGGPL AEVLRPSLVG VCSIPTSPAG SSPSGVLQRT MPSVSDSSVC  360
NSAIVAASST PTDIVAFQWF T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-45	GRF family protein