PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963302.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20331.3 Da    PI: 10.5089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-111761650
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++r   ++kRr  i+K A+EL++L ++ + v+i s  gk y ++
  XP_024963302.1 17 DRRRLLALTKRRDEIFKEASELCTLVGVSIVVLITSLCGKTYCFA 61
                    5789999********************************999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MKSKRGRRRV GLKFVKDRRR LLALTKRRDE IFKEASELCT LVGVSIVVLI TSLCGKTYCF  60
AHPNVESVES QFLYHTLLQP GFLEPDRDVH IRELNKQLDD VRDQLEAEEK RAKVLKXMRK  120
KRLKKVWEEP LPKLXHAEAL KVKERLHQLQ DSIFNMFNQK FIRDVVGTAV DNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110122KRAKVLKXMRKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-17M-type_MADS family protein