PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963311.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family BBR-BPC
Protein Properties Length: 328aa    MW: 36222.6 Da    PI: 8.732
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind365.97.9e-11213281301
       GAGA_bind   1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+re  r+k  + +   ++ +s+     +q+m+++aerda+i+ernla+sekk a+aerdma+lqrd+a+aern a++erdn++++l+++e
  XP_024963311.1   1 MDDGGHREngRQKQpQGQwlmQHqPSM-----KQIMTIMAERDAAIQERNLAMSEKKTALAERDMALLQRDSAVAERNSAIMERDNAIATLQYRE 90 
                     899999776665542111222223444.....4************************************************************** PP

       GAGA_bind  89 nsla......salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk.kseksk 175
                     ns++      s++p+g+q+++++k++++ qq ++++++       r  + l + p   ++ +++++k++k  ++ +++k+++a++k k + ++ +
  XP_024963311.1  91 NSMNsgnntsSSCPPGCQISRNVKHVHHPQQYQQEEMGGGGGSgGRGVDPLPVSPAAPEPAKSRRTKRTKDMKSVTDKKTSRASRKVKlECDDLN 185
                     **9999999999*******************8888887766554777777777777777777777777777777777777777654440333333 PP

       GAGA_bind 176 kkvkkesader...................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                     k   ++++  +                    k e+k++dl+ln+v++D+s++P+PvCsCtG+ r CYkWGnGGWqS+CCttt+S+yPLP  +++r
  XP_024963311.1 186 KAMYEDTH--DwsgggggdsgggvddlnheLKPEWKDQDLGLNQVAFDDSSMPIPVCSCTGVFRACYKWGNGGWQSSCCTTTMSMYPLPSLPNKR 278
                     33333333..2569********************************************************************************* PP

       GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +aR++grKmS+++f+kl+++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
  XP_024963311.1 279 HARVGGRKMSGNVFNKLINRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 328
                     *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDDGGHRENG RQKQPQGQWL MQHQPSMKQI MTIMAERDAA IQERNLAMSE KKTALAERDM  60
ALLQRDSAVA ERNSAIMERD NAIATLQYRE NSMNSGNNTS SSCPPGCQIS RNVKHVHHPQ  120
QYQQEEMGGG GGSGGRGVDP LPVSPAAPEP AKSRRTKRTK DMKSVTDKKT SRASRKVKLE  180
CDDLNKAMYE DTHDWSGGGG GDSGGGVDDL NHELKPEWKD QDLGLNQVAF DDSSMPIPVC  240
SCTGVFRACY KWGNGGWQSS CCTTTMSMYP LPSLPNKRHA RVGGRKMSGN VFNKLINRLA  300
AEGHDLSNPV DLKEHWAKHG TNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-136BBR-BPC family protein