PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963403.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ERF

Protein Properties

Length: 757aa MW: 86058.9 Da PI: 5.3183

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50	7.4e-16	123	172	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr + +grW+AeI+dp + r+r +lg+++t+eeAa +++a kl+g XP_024963403.1 123 KFRGVRKGH-WGRWAAEIMDPAT---RQRLWLGTYDTPEEAAMVYDNATIKLRG 172 89**887.******954...4***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MEDCFMLTLI KQTEHKRRIR KEVPTMSEKF SDQEELPFLK LIRISMTDPY ATDSSEDKDD 60 HIFERWHVKK YVNEINIQPS SKARMMPLKG NMTTTRNSPC AIDSKQKAMK KKNKKNPEDN 120 VRKFRGVRKG HWGRWAAEIM DPATRQRLWL GTYDTPEEAA MVYDNATIKL RGARAITNFV 180 LPTCNQASSI KYMFKYINKG PDRATVAIVE NSDDVVTVNV VDKIKQYYDC RYLSACEASW 240 RIFGYDVHYR TPSVLRLPFH LPGQQQVVFG AEDNIDNVLN RPSVASSIDA CYAHGLLDDD 300 KEYIETIEEA NLTASGFYLR FLFATMLISN NLSRPEFVWE KPWQYLADGI MYNQRIALQS 360 PALNEEQMKN LTLLDIEKIL LRNNSTLKNF TTLPYPDNDS LESSNNRLIA EELDYNHHNL 420 GDEFHTLVTA LTDEQRGVYD EIMIADEKKK GGVFFVYGHG GTGKTFLWKT LATSIRSKGE 480 IVLNVASSGI ASLLLTGGRT AHSRFHIPLI LNEDSLCQMK PDSDVAGLIK KTTLIIWDEA 540 PMVHKHAFEA LDRSMNDIFN AQCSGDSNMI FGDKVIVLGG DFRQILSVIP NAGRQDIVNA 600 SLSSSYIWEK CKVLRLTRNM RLTANSESSE IEQTRDFAKW ILDLGEGKVG GDNDGEAVIE 660 IPHDLLITDC IDPISALIEF VYPSILENIN NLAYFQERAI LAPKNEVVQE INDCLLSLFP 720 GEEKEYLSSD TLCESEHLHD EFDKTLYSPD VLNGLKL

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MEDCFMLTLI KQTEHKRRIR KEVPTMSEKF SDQEELPFLK LIRISMTDPY ATDSSEDKDD  60
HIFERWHVKK YVNEINIQPS SKARMMPLKG NMTTTRNSPC AIDSKQKAMK KKNKKNPEDN  120
VRKFRGVRKG HWGRWAAEIM DPATRQRLWL GTYDTPEEAA MVYDNATIKL RGARAITNFV  180
LPTCNQASSI KYMFKYINKG PDRATVAIVE NSDDVVTVNV VDKIKQYYDC RYLSACEASW  240
RIFGYDVHYR TPSVLRLPFH LPGQQQVVFG AEDNIDNVLN RPSVASSIDA CYAHGLLDDD  300
KEYIETIEEA NLTASGFYLR FLFATMLISN NLSRPEFVWE KPWQYLADGI MYNQRIALQS  360
PALNEEQMKN LTLLDIEKIL LRNNSTLKNF TTLPYPDNDS LESSNNRLIA EELDYNHHNL  420
GDEFHTLVTA LTDEQRGVYD EIMIADEKKK GGVFFVYGHG GTGKTFLWKT LATSIRSKGE  480
IVLNVASSGI ASLLLTGGRT AHSRFHIPLI LNEDSLCQMK PDSDVAGLIK KTTLIIWDEA  540
PMVHKHAFEA LDRSMNDIFN AQCSGDSNMI FGDKVIVLGG DFRQILSVIP NAGRQDIVNA  600
SLSSSYIWEK CKVLRLTRNM RLTANSESSE IEQTRDFAKW ILDLGEGKVG GDNDGEAVIE  660
IPHDLLITDC IDPISALIEF VYPSILENIN NLAYFQERAI LAPKNEVVQE INDCLLSLFP  720
GEEKEYLSSD TLCESEHLHD EFDKTLYSPD VLNGLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	8e-37	ERF family protein