PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963459.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 345aa MW: 39857.5 Da PI: 7.7126

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W++I++ g+ R++k+c++rw +yl XP_024963459.1 14 KGLWSPEEDEKLINHITKFGHGCWSSIPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	43.6	6.6e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+ XP_024963459.1 67 RGTFSQQEENLIIELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRHSSCYKQ RLRKGLWSPE EDEKLINHIT KFGHGCWSSI PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDHNTHKPIS DFENDENDHR NTADKPKPLM VLPAPETHEF FLTRYGTSDR TAATDTRHLN 180 SDHFPGFIDF NYGQPLPEST IFFGSNLSSD SNSDSLPAEL IPEYTTAIPS SVGSGFHRNN 240 WELSSLFETN NGVSWGLTNS YFGRNQKELH SQIPFPTQQQ EMKWNRHLQY PFLLGSCTIQ 300 SRELYDETKP ETDLGMKREL FQNHQSEDTY NKQLHRMSAS YEQLT

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRHSSCYKQ RLRKGLWSPE EDEKLINHIT KFGHGCWSSI PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDHNTHKPIS DFENDENDHR NTADKPKPLM VLPAPETHEF FLTRYGTSDR TAATDTRHLN  180
SDHFPGFIDF NYGQPLPEST IFFGSNLSSD SNSDSLPAEL IPEYTTAIPS SVGSGFHRNN  240
WELSSLFETN NGVSWGLTNS YFGRNQKELH SQIPFPTQQQ EMKWNRHLQY PFLLGSCTIQ  300
SRELYDETKP ETDLGMKREL FQNHQSEDTY NKQLHRMSAS YEQLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	2e-88	MYB family protein