PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963481.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 272aa MW: 31415.2 Da PI: 9.056

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.6e-19	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W+tIa++++ gR++k+c++rw++ XP_024963481.1 10 RGHWRPAEDEKLRQLVQQYGPQNWNTIAEKLQ-GRSGKSCRLRWFNQ 55 899***************************.*********996 PP
2	Myb_DNA-binding	56.9	4.9e-18	62	105	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+e+l+ a+++ G++ W++I+r ++ gRt++ +k++w+ XP_024963481.1 62 RGPFTQEEEERLLAAHRLQGNK-WALISRLFP-GRTDNAVKNHWHV 105 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MEEIGRSCPR GHWRPAEDEK LRQLVQQYGP QNWNTIAEKL QGRSGKSCRL RWFNQLDPRI 60 NRGPFTQEEE ERLLAAHRLQ GNKWALISRL FPGRTDNAVK NHWHVIMARK QREKSKLFDS 120 GFHQRPLSSD EDSSSNYFMK YENGGKEKIT SWSCMIPSTM SAAERSSSIE FIGKEEGKGC 180 FNSRMYHHSN SEVSNSSPDH SFFRNYVGVY RVASDCQARK KATFLSPFGS CCRNLQSLVK 240 IRDTIQQERE NDETIDHKDI PFIDFLGVGI SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73410.1	4e-65	MYB family protein