PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963516.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 579aa MW: 63128.7 Da PI: 9.4925

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_024963516.1 68 FICEVCNKGFQREQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	13.9	0.00016	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ XP_024963516.1 144 YKCEKCSKKYAVQSDWKAHSKTC 166 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MAAASSSTSF FGGRSEEEQH VSSVPTSSST IQSAAAQQKK KRSLPGTPNP DAEVIALSPK 60 TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVKRKVYL CPEPSCVHHD 120 PSRALGDLTG IKKHYSRKHG EKKYKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAQESA RHPSALGTIG SHLFGGHLSN SMNLGLSQVG SQISQLHDQN 240 HQSSTTNLLS LGSANFEQVM LPPSQTTLFS QTQQQQMPNS SSPFFISNSN QGLNHVFDYE 300 QQRQQHGLMA NKPNIHGLMQ LPDLHSNTTK ISPNLFNLGF FSGSSNPTNG LKNSENNSQN 360 NDTNMSSTGF MIPDHQFNNG GGSHDRVFLN SNNPHQENQM PPHMSATALL QKAAQMGSTT 420 SNNNATTLLK SFGSSSKSGV GGGDGKSHTG RQTLSSNFDA RGDQALQSEM ESDNQLQGLM 480 NSLSSGGASS MFGGYGGNQN RNMNFGNMNE AGKFNPQNFS LSVGNSNRTT LDFLGVGYSQ 540 VEQQQQRPAH INVGSLDPEM DSSTQATHMR GGSSKLQGN

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MAAASSSTSF FGGRSEEEQH VSSVPTSSST IQSAAAQQKK KRSLPGTPNP DAEVIALSPK  60
TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVKRKVYL CPEPSCVHHD  120
PSRALGDLTG IKKHYSRKHG EKKYKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAQESA RHPSALGTIG SHLFGGHLSN SMNLGLSQVG SQISQLHDQN  240
HQSSTTNLLS LGSANFEQVM LPPSQTTLFS QTQQQQMPNS SSPFFISNSN QGLNHVFDYE  300
QQRQQHGLMA NKPNIHGLMQ LPDLHSNTTK ISPNLFNLGF FSGSSNPTNG LKNSENNSQN  360
NDTNMSSTGF MIPDHQFNNG GGSHDRVFLN SNNPHQENQM PPHMSATALL QKAAQMGSTT  420
SNNNATTLLK SFGSSSKSGV GGGDGKSHTG RQTLSSNFDA RGDQALQSEM ESDNQLQGLM  480
NSLSSGGASS MFGGYGGNQN RNMNFGNMNE AGKFNPQNFS LSVGNSNRTT LDFLGVGYSQ  540
VEQQQQRPAH INVGSLDPEM DSSTQATHMR GGSSKLQGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-102	C2H2 family protein