PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963543.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 259aa    MW: 28747.3 Da    PI: 6.4207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034104126123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_024963543.1 104 FPCNYCQRKFFSSQALGGHQNAH 126
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MMLSKSIDLE LEVQEDDDSD ISSQVDSNIS VQNTFPSRVT DSLKIPKTSQ TTYDPISLEL  60
SLSFNSNTEK FEPRNSMGSS ISTTSKSTNE IESQTTPGTL PRVFPCNYCQ RKFFSSQALG  120
GHQNAHKRER MLAKRTMRMG IFSERYAGQL ATFPLHGTSL RSLEIKAHSS QHQTFVPPVM  180
RMPPVISSMS PRHAIGFMGL AIHVEDDGHD QLLWPGSFRQ VAATGAGVDS LAETSEMNTM  240
EGFRQVYDGH ATPDLTLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-38C2H2 family protein