PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963582.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 382aa    MW: 42363.5 Da    PI: 7.2481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11427226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    + e+Cr+f+r G+C+yG+rCkF H+
  XP_024963582.1  4 RKEPCRNFQR-GFCQYGERCKFLHV 27
                    789*******.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MPPRKEPCRN FQRGFCQYGE RCKFLHVNQQ QSKPNPFGFG TQNATQALHT DSQPQKSNPF  60
GFGVQNNSQI GFKPNQFKPG ENKWSRFGSS SAPQKQDNQP SAPNHVCTDS ESCKYQIKED  120
FEQEKPLWKL TCYGHRKCGP CDIVGDISCE ELRASAYDDA KHGMNIQSIV EKERSLLSSK  180
LIEFENLLRN PYTPSQNSTH TAQNTFPGNN SSPQMIQNNV PPSVSSFSQL GTTINAGFQM  240
RPAAPNNAFG QSNQFQAPTQ MSNASQKNNF AFGNPGPTGS QPSSQLFHSS FPSTTTTFAN  300
TDRNAFSNAA ITTNVDVAHQ QSSMPFGNHN ASTNVVSDPV SSVEMTQNLQ KSYSHRDNSI  360
WFKDEWTPGE IPEEVPPEGV IY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.15e-65C3H family protein