PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963617.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24477.3 Da    PI: 9.8798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.52e-191557143
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    krien+  r+vt+skRrngi+KKA+ L +LC +++a+i+fs +
  XP_024963617.1 15 KRIENDKERTVTLSKRRNGIFKKANALATLCRIQIAIILFSIS 57
                    79**************************************966 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MARLPSKGRK KIQLKRIEND KERTVTLSKR RNGIFKKANA LATLCRIQIA IILFSISEKP  60
LSFGSPNVQS VVNKFLNPNQ VDQQPNDFID MAVNSNHEPK LQDFNKEFDE VNERLANEKK  120
QEQMFDEYIK RLLGGKTYED YVVIRGYYGF MQIKFKMEEL QGNKEYTLDA VCRPSSSNDE  180
NEADLSKIGV PKRLLEVVIV RKKNYLLIPM L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-23M-type_MADS family protein