PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963618.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21707.4 Da    PI: 8.2051
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.6e-161555141
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    k ien+  r vt skRrn ++KK +EL +LC++++a+i++s
  XP_024963618.1 15 KLIENEXERAVTXSKRRNALFKKGNELATLCGVKIAIILLS 55
                    569***********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MARLPRGGNR NTELKLIENE XERAVTXSKR RNALFKKGNE LATLCGVKIA IILLSIGRKS  60
ISFGNPSVQS VVTQYLNSDQ VDQQXDDIDT RSANSYHEST NPELNKELNE AIERLAEVKK  120
EGHMLDEILK RSYGGKTHKE YVNSLGYDEL MQLKGKNEEL RRICDAASRP SSSNNEHDAD  180
LSKIGGPKEY XKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-20M-type_MADS family protein