PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963619.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 120aa    MW: 13837.8 Da    PI: 9.3243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF595.9e-191559145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +rien+  r vt+sk  ngi+KKA+EL +LC +++a+i+fs tgk
  XP_024963619.1 15 ERIENEKERAVTLSKWCNGIFKKANELATLCHIQIAIILFSITGK 59
                    69****************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MARLPSKDRK KIQLERIENE KERAVTLSKW CNGIFKKANE LATLCHIQIA IILFSITGKR  60
LSFGSPNVQS VVNKFLNPNQ LDQQPNDFIN MAVNSNHESK LQDFNKEFDE VNEHLANEKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-22M-type_MADS family protein