PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963690.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 239aa MW: 27387.9 Da PI: 9.1008

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.9e-21	27	85	4	57
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++tkeq++ Le+l+++ r+p+ae+++e++++l +++ ++V++WFqN++a++++ XP_024963690.1 27 RWNPTKEQINMLENLYRQgVRTPTAEQIQEITTRLqtygHIEGKNVFYWFQNHKARQRQ 85 9**************99************************************97 PP
2	Wus_type_Homeobox	114.8	4.2e-37	26	87	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 RW+Pt+eQi++Le+ly++G+rtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq XP_024963690.1 26 CRWNPTKEQINMLENLYRQGVRTPTAEQIQEITTRLQTYGHIEGKNVFYWFQNHKARQRQKQ 87 6***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MEGNSSCPES TMAVAGKETT GTPAPCRWNP TKEQINMLEN LYRQGVRTPT AEQIQEITTR 60 LQTYGHIEGK NVFYWFQNHK ARQRQKQKQD HLSYVHQYLH HHHHHHHQPA IFPMTHNPNV 120 VYGQCYLPLS DLGFYTQYPK VFIPNSNVIK RRSSRTVKSK LSVGPPIFAE GNTMIKSKMV 180 NAKNYNQQET LDLFPLHPTG ILQQKESMVS SVNPHALTTC TSSSSDCSQD QLLYDFFSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	1e-38	WOX family protein