PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963778.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26228.9 Da    PI: 10.0215
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.4e-30958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+ +i+fss+g++yey+
  XP_024963778.1  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEITLIVFSSRGRVYEYA 58
                    79***********************************************8 PP
2K-box1059.1e-35821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +e +a+ +qqe++kL+++i++Lq+++Rhl+Ge+L+ L++keL+qLe++Le+++++iRskK++++l+++e+lqk+e el+++n  Lr+k++e
  XP_024963778.1  82 SQEINAQFYQQESKKLRQQIQMLQNTNRHLMGEGLGCLNVKELKQLETRLERGISRIRSKKHDMILAETENLQKREIELEHHNAFLRSKIAE 173
                     677899***********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEITLIVFSS RGRVYEYANN  60
NIKSTIERYK KATSSTPNTW SSQEINAQFY QQESKKLRQQ IQMLQNTNRH LMGEGLGCLN  120
VKELKQLETR LERGISRIRS KKHDMILAET ENLQKREIEL EHHNAFLRSK IAESERVQQL  180
NVNTGHEYNA LQAYLARNAL QLNIMEPMED APSAYSIPQK HSLHLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-103MIKC_MADS family protein