PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963805.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LSD

Protein Properties

Length: 177aa MW: 18663.7 Da PI: 8.2075

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40	6.5e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC++V XP_024963805.1 7 CSGCRSILLYPRGASNVCCALCNAV 31 ************************9 PP
2	zf-LSD1	49.7	6.1e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV XP_024963805.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.6	2.8e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ XP_024963805.1 84 CGNCRTMLMYPFGAPSVKCAVCHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MQSQIVCSGC RSILLYPRGA SNVCCALCNA VTSVPPPGME MDQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPVSNQLA QVNCGNCRTM LMYPFGAPSV KCAVCHYITN VNMSSGRVPV 120 SMRPNGNATS GSMPSVSTET PHSHNQTVVV ENPMSVDESG KLVSNVVVGV TTEKAIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	5e-71	LSD family protein