PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964050.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 1087aa MW: 120390 Da PI: 6.6487

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.9	1.7e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_024964050.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_024964050.1 226 QQLLLGIRRA 235 889**997 PP
2	Auxin_resp	115.8	3.7e-38	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdld vrW+nS+Wr+L+ XP_024964050.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDGVRWKNSQWRNLQ 343 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1087 aa Download sequence
MKMPANSSGS TLTTANHGEG GAKNRIINPE LWQACAGPLV NLPASGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLQS KLLCILHDVT LHADTETDEV YAQMTLQPVP SFDKEALLRS 120 DLLMKAHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH 180 DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPA 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCSNQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD GVRWKNSQWR NLQVGWDEAT AGERRNRVSI 360 WDIEPVTSPF FICPTPPFYQ SKRPRQQGML GDESADIDNL VKRTMPWLGE DMSMKDPGLS 420 LVQWMNMQQG SSLANQIQPS YLNPLAGSVL QNYGGPDLSR QLGLSAPQML TQNNLQFNNQ 480 RSTSQLDQLQ KLPQPATTTN PLAVMMQPQQ LTDLTQQTVR QTLINQTLPQ NQIQSQIPSQ 540 NVLQQQSMQN HEFQRNLQLQ QQQQMMAVSQ NQQKISLPSQ FPDQQISQKL QMPENQIQLL 600 QKLHHQQQAL LAQQGQHPQD QQKPLIDVPQ SFARSIPTSQ MMEMPSQIPI TSQPQQMPRK 660 NSEANFRFSH LSQQPKLQHQ QPELSGQMTG ATPMPINLLS TNGSSLLTGT AGGGQSGISD 720 DVPSCSTSPS TNNCPNMVPS IVNGRSYGST TMGGEEIIQA SAHLMNTTGL ETVSANGNFV 780 KELQQKADVK PSVNVSKIHN QGFLAPQTYL HNLAGTQMDY LDSSSSATSV CLSQNDVHLQ 840 PQNSNQLSFN SQPLPFRDTI QDGEVQDDPR ADIPFGVNMD NRLGMSSVIP DPLLTKGMMG 900 SGKDFQNNHS SGGMISSYEN PSKDTQPELS SSMVSQSFGV PDMTFNSIDS TINDSSLLNS 960 AVWAPPPQQF QRMRTYTKVY KRGAVGRSID ITAYSGYDEL KQDLARRFGI EGQLEDRQRI 1020 GWKLVYVDHE SDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDGDFGG NSVLPNQACS 1080 SSGGGKV

Sequence ? help Back to Top

Protein Sequence Length: 1087 aa Download sequence

MKMPANSSGS TLTTANHGEG GAKNRIINPE LWQACAGPLV NLPASGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLQS KLLCILHDVT LHADTETDEV YAQMTLQPVP SFDKEALLRS  120
DLLMKAHKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPA  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD GVRWKNSQWR NLQVGWDEAT AGERRNRVSI  360
WDIEPVTSPF FICPTPPFYQ SKRPRQQGML GDESADIDNL VKRTMPWLGE DMSMKDPGLS  420
LVQWMNMQQG SSLANQIQPS YLNPLAGSVL QNYGGPDLSR QLGLSAPQML TQNNLQFNNQ  480
RSTSQLDQLQ KLPQPATTTN PLAVMMQPQQ LTDLTQQTVR QTLINQTLPQ NQIQSQIPSQ  540
NVLQQQSMQN HEFQRNLQLQ QQQQMMAVSQ NQQKISLPSQ FPDQQISQKL QMPENQIQLL  600
QKLHHQQQAL LAQQGQHPQD QQKPLIDVPQ SFARSIPTSQ MMEMPSQIPI TSQPQQMPRK  660
NSEANFRFSH LSQQPKLQHQ QPELSGQMTG ATPMPINLLS TNGSSLLTGT AGGGQSGISD  720
DVPSCSTSPS TNNCPNMVPS IVNGRSYGST TMGGEEIIQA SAHLMNTTGL ETVSANGNFV  780
KELQQKADVK PSVNVSKIHN QGFLAPQTYL HNLAGTQMDY LDSSSSATSV CLSQNDVHLQ  840
PQNSNQLSFN SQPLPFRDTI QDGEVQDDPR ADIPFGVNMD NRLGMSSVIP DPLLTKGMMG  900
SGKDFQNNHS SGGMISSYEN PSKDTQPELS SSMVSQSFGV PDMTFNSIDS TINDSSLLNS  960
AVWAPPPQQF QRMRTYTKVY KRGAVGRSID ITAYSGYDEL KQDLARRFGI EGQLEDRQRI  1020
GWKLVYVDHE SDVLLVGDDP WEEFVNCVRC IKILSPQEVQ QMSLDGDFGG NSVLPNQACS  1080
SSGGGKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein